FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004691710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004691710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139433
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25841.8532198260096246No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT4680.33564507684694445No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4220.3026543214303644No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT3600.25818852065149567No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT3110.22304619422948657No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2860.20511643585091047No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT2570.1843179161317622No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT2440.17499444177490264No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT2360.16925691909375828No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT2270.1628022060774709No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT2090.14989278004489612No Hit
GTATCAACGCAGAGTACGGGTCTGGTGCAACGTGGGGGCTGGAGGGTGGG2080.1491755897097531No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1990.14272087669346567No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1980.14200368635832264No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT1920.13770054434746437No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1800.12909426032574783No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1730.12407392797974653No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1730.12407392797974653No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1680.12048797630403132No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT1650.11833640529860219No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT1650.11833640529860219No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1600.11475045362288698No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1540.11044731161202871No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1510.10829574060659958No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT1490.1068613599363135No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1470.1054269792660274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)