EGAF00004691729 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691729
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494310
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1741	0.35220812850235683	No Hit
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT	1016	0.20553903420930186	No Hit
ATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCT	979	0.1980538528453804	No Hit
GTATCAACGCAGAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCC	840	0.16993384718091886	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	779	0.15759341304039975	No Hit
CTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCG	705	0.1426230503125569	No Hit
GTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCA	678	0.1371608909388845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACCGGA	75	5.934471E-7	54.268375	70
AGGCTCG	90	3.4477125E-8	52.76092	70
TCGTATG	235	0.0	45.67838	40
CGTATGC	235	0.0	44.462418	41
CTCGTAT	220	0.0	43.821808	39
GCCGTCT	240	0.0	43.155773	46
TATACAC	255	0.0	40.97904	3
ATGCCGT	265	0.0	40.0863	44
GGTATCA	1685	0.0	39.547043	1
TCGTGCT	45	8.584236E-5	39.343964	44
CGAGCCC	275	0.0	39.186203	15
CGTCTTC	260	0.0	38.814556	48
CGAGACA	270	0.0	38.753384	23
CGCTCGT	45	9.462633E-5	38.698772	41
ATCTCGT	240	0.0	38.266	37
CACGAGA	275	0.0	38.02952	21
CCCACGA	275	0.0	38.021816	19
GTATCAA	4405	0.0	37.89298	1
CCGTCTT	275	0.0	37.83063	47
CTTATAC	285	0.0	37.822727	1