FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004691860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004691860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55643
Sequences flagged as poor quality0
Sequence length20-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7231.299354815520371No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2370.4259295868303291No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT2260.4061607030533939No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1600.28754740039178334No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1480.2659813453623996No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1260.22644357780852936No Hit
GTATCAACGCAGAGTACGGGTCTGGTGCAACGTGGGGGCTGGAGGGTGGG1230.2210520640511834No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT1170.21026903653649157No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT1100.19768883776935106No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1020.18331146774976187No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1010.18151429649731324No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT950.17073126898262136No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT920.16533975522527541No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT910.16354258397282675No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT860.15455672771058354No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTT840.15096238520568625No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT820.14736804270078896No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT790.141976528943443No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT750.13478784393364843No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT730.13119350142875114No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT720.1293963301763025No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT720.1293963301763025No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT700.1258019876714052No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT690.12400481641895657No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT680.12220764516650791No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT650.11681613140916197No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT650.11681613140916197No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT620.11142461765181605No Hit
GTATCAACGCAGAGTACGGGTCTGGTGCAACGTGGGGGCTGGAG590.1060331038944701No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT570.10243876138957282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)