EGAF00004691907 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004691907
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1057337
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTCAGTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGAC	1776	0.16796915269209345	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1483	0.14025802558692263	No Hit
GAGTTTATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGT	1405	0.13288100198895905	No Hit
ATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGTCCACCT	1232	0.11651914195757833	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	1168	0.11046619951822362	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1126	0.10649395604239709	No Hit
GTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGACATGGG	1069	0.10110305418234679	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	205	45.49851	41
TCGTATG	215	43.29039	40
GACGGAC	225	40.684635	26
GACCGGA	195	39.056953	70
GGTATCA	1900	39.043533	1
ATGCCGT	260	38.742393	44
CGTCTTC	245	38.58404	48
CGGACTC	260	37.857082	28
ACGAGAC	245	37.32809	22
ATCTCGT	225	36.546616	37
GTATCAA	4175	36.266834	1
CCGTCTT	270	34.95162	47
CCCACGA	270	33.86057	19
ATCTCCG	270	33.857365	10
TCTCCGA	285	33.263374	11
CGAGCCC	275	33.243347	15
ATCAACG	4750	31.861563	3
TCAACGC	4780	31.661594	4
TATCTCG	260	31.593616	36
CGAGACG	290	31.540276	23