FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004692044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004692044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences624184
Sequences flagged as poor quality0
Sequence length20-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13270.21259756738397653No Hit
GTAGTAGACACTCGTGTCCTCTGCTCTCAGGCTGCTCATATGCAGATACA10700.171423810927547No Hit
GTCTACTACTGTGCGAGAGTGTGGCGGACTACGGTGACTACTGGCTATTC8920.14290657882931956No Hit
GTATCAACGCAGAGTACGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCC8200.13137151865475566No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT8030.12864796278020582No Hit
CAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCA7940.12720608025838534No Hit
GTATTACTGTCAGCAGTATGGTAGCGCACTCCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAA7650.12256001435474156No Hit
CTGTAGCACTGTCTTCATCACAGATATTGCTCTGGGTAGCAGTAACTATC7280.11663227509836843No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC6650.10653909744562501No Hit
CTACCATACTGCTGACAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTC6470.10365533240198402No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC6340.10157261320379889No Hit
GGGTAGCAGTAACTATCTGATTATCCAGCTCCACTTCTGTAGGATCACAT6310.10109198569652539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)