FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004692154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004692154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences226833
Sequences flagged as poor quality0
Sequence length20-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18290.8063200680676974No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT7770.3425427517160201No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT7080.312123897316528No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6920.30507024991954435No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5130.22615756966578937No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT4930.21734051041955976No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT4650.20499662747483832No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT4600.2027923626632809No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT3930.17325521418841172No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTT3890.1714918023391658No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT3880.17105094937685433No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3840.16928753752760842No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT3750.16531986086680509No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT3730.16443815494218214No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3550.15650280162057548No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3290.145040624600477No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3170.13975038905273923No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT3110.13710527127887034No Hit
GTATCAACGCAGAGTACGGGTCTGGTGCAACGTGGGGGCTGGAGGGTGGG3040.13401930054268998No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT3010.13269674165575554No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTT2840.1252022412964604No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT2780.12255712352259152No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2750.12123456463565707No Hit
CTCCAGCCCCCACGTTGCACCAGACCCGTACTCTGCGTTGATAC2670.11770774093716524No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2580.11374006427636191No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT2550.11241750538942748No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT2470.10889068169093563No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT2450.10800897576631267No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT2440.10756812280400117No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2430.10712726984168972No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2300.10139618133164045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)