EGAF00004692265 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004692265
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	940299
Sequences flagged as poor quality	0
Sequence length	20-76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGTTACACTACGCCGTTCACTTTCGGCGGGGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT	2058	0.2188665520222823	No Hit
GTGTAACTCTGTTGACAGTAGTAAGTTGCAAAATCTTCAGGTAGCAGACTGCTGATGGTGAGAGTGAAGTCTGTC	1792	0.19057767795137506	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	1731	0.184090379762182	No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC	1382	0.1469745261879466	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	1345	0.14303960761417378	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1203	0.1279380282229376	No Hit
CTGTAGCACTGTCTTCATCACAGATATTGCTCTGGGTAGCAGTAACTATC	1180	0.1254919977581599	No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGTCAAGTCAAACTCTTAGCAAGAAGTTAAACTGGTATCAGCAGAAG	1102	0.11719676400804425	No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA	1020	0.10847613365535856	No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT	998	0.10613645234122336	No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAGGGGGTCAGGCTGGAACTGAGGAG	976	0.10379677102708819	No Hit
ACACTACGCCGTTCACTTTCGGCGGGGGGACCAAGGTGGAGATCAAACGA	968	0.10294597782194811	No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC	957	0.10177613716488053	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCACCG	20	0.007876151	50.867897	18
TCGCGTA	35	2.3138797E-5	49.13568	38
CGTATGC	135	0.0	48.667706	41
ATCGCGT	45	1.9239178E-6	45.778458	37
TCGTATG	120	0.0	43.152046	40
CCTAACG	55	1.6854392E-7	43.149166	2
ACGAGAC	250	0.0	42.061985	22
ATGCCGT	190	0.0	42.0329	44
CACGAGA	265	0.0	38.399036	21
CCCACGA	290	0.0	35.08131	19
CGAGACA	300	0.0	35.060978	23
GTATCAA	3355	0.0	34.7674	1
ATCTCGT	150	0.0	34.333843	37
CTAACGC	70	1.1157317E-6	33.902916	3
TATACAC	400	0.0	33.902912	3
GTATGCC	220	0.0	33.047318	42
TAACGGC	105	6.9303496E-10	32.630363	36
TCGAATA	45	0.003532457	32.398273	64
GCCCACG	325	0.0	32.346767	18
CCGTCGT	45	0.0043596155	31.03548	47