FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004692266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004692266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences940299
Sequences flagged as poor quality0
Sequence length20-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22080.23481892461865855No Hit
GAGTTACACTACGCCGTTCACTTTCGGCGGGGGGACCAAGGTGGAGATCAAACGAACTGTGGCTGCACCAT20080.21354909449015688No Hit
GTGTAACTCTGTTGACAGTAGTAAGTTGCAAAATCTTCAGGTAGCAGACTGCTGATGGTGAGAGTGAAGTCTGTC18760.19951100660534574No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT18460.19632053208607048No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC12570.13368088235763304No Hit
CTGTAGCACTGTCTTCATCACAGATATTGCTCTGGGTAGCAGTAACTATC11210.11921739787025191No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC11020.11719676400804425No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC10810.11496343184455157No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCT10730.1141126386394115No Hit
GTAGGAGACAGAGTCACCATCACTTGCCGGTCAAGTCAAACTCTTAGCAAGAAGTTAAACTGGTATCAGCAGAAG10550.11219835392784634No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG10510.11177295732527633No Hit
GTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGG9660.10273327952066312No Hit
GGGTAGCAGTAACTATCTGATTATCCAGCTCCACTTCTGTAGGATCACAT9570.10177613716488053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)