FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004692670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004692670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1270129
Sequences flagged as poor quality0
Sequence length20-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG88810.6992203154167805No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC42600.3353990027784579No Hit
GCCTTGGGCTGACCCAGGACGGTCATCTTGGTCCCTCCGCCGAATACCAAAGTGCTGCTGCTTGTATATGAGCTG30600.24092041044649795No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT28820.22690608591725722No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG27690.21800935180599765No Hit
CTGCTATTCCTCACCCTCCTCACTCGGGGCACAGGGTCCTGGGCCCAGTC26800.21100218954137728No Hit
GTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTG24990.19675166853130666No Hit
TTATAACTCTGTCTCCTGGTACCAACAACACCCAGGCAAAGCCCCCAAAC23800.18738254145838731No Hit
GGGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG22880.18013918271293702No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC21420.16864428731254857No Hit
GATTATTACTGCAGCTCATATACAAGCAGCAGCACTTTGGTATTCGGCGGAGGGACCAAGATGACCGTCCTGGGT20730.16321176825346087No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTT19840.1562046059888405No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCCAGGACGGTCATCTTGGTCCCTC19480.1533702482188817No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAG19290.15187433717362567No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGGTAG18860.14848885428173042No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG18570.14620562163370807No Hit
CTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTT17730.13959212017047087No Hit
TCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATAT17380.1368364945607887No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT17370.13675776240051207No Hit
CTCCTGCACTGGAACCAGCAGTGACGTTGGTAATTATAACTCTGTCTCCTGGTACCAACAACACCCAGGCAAAGC16570.1304591895783814No Hit
GTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTAATTATAACTCTGTCTCCTGGTACCAACAACA16130.12699497452620953No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGGGCAGGTCTGTGTGGGTCACGGTGCA16020.1261289207631666No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAGGCCACTGTCACGGCTC16000.12597145644261332No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG15760.12408188459597412No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGTGACTTCTACC15360.12093259818490877No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGGTAGCTGCTGG15250.1200665444218658No Hit
GTAATACGCAGCCGTGTCTTCGGCTCTCAGGCTGATCATTTGCAGATCCA15010.11817697257522661No Hit
GAGTTATAATTACCAACGTCACTGCTGGTTCCAGTGCAGGAGATGGTGAT14580.11479148968333139No Hit
GCTCAGGCGTCAGGCTCAGGTAGCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCA14370.11313811431752208No Hit
GAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGAT14370.11313811431752208No Hit
CACCAGTGTGGCCTTGTTGGCTTGAAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGG14290.11250825703530902No Hit
GTAATAATCAGCCTCGTCCTCAGCCTGGAGCCCAGAGATGGTCAGGGAGG14190.11172093543254268No Hit
CCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCAGGCGTCAGGCTCAGGTAGCTG13680.10770559525843439No Hit
CCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTAC13550.10668207717483816No Hit
GGCCTGGGCTCTGCTATTCCTCACCCTCCTCACTCGGGGCACAGGGTCCTGGGCCCAGTCTGCCCTGACTCAGC12760.10046223651298412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)