FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004692806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004692806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1135443
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36730.32348607547891No Hit
CCTCTGAGGAGCTCCAAGCCAACAAGGCCACACTAGTGTGTCTGATCAGT26510.2334771538509639No Hit
CTCTATGATGTATATTGGTACCAACAACTTCCAGGGACAGCCCCCAAACTCCTCATCTTTGATAACATCAATCGG24960.21982609430856503No Hit
TATCAGAACAGTGTCAATGGTCCTCTTTATGTGTTCGGAAGTGGGACCAA23720.20890524667464594No Hit
GGGTTAGAGTTGGGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGAC23620.20802453315578148No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGACTCCGGACGGTGATCTTGGTCCCA20330.1790490583851413No Hit
GTTCTGATAGGACCGGCAGTAATAATCAGCCTCATCTTCAGACTGGAGAC19260.16962542373329176No Hit
CTGTAGCACTGTCTTCATCACAGATATTGCTCTGGGTAGCAGTAACTATC18610.16390078586067286No Hit
GTTTGGAGGGTTTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCCATCTGCCTTCCAGGCCACTGTCACAGCTC17890.15755964852484888No Hit
GTGCAGGGAGAAGGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCCCTGGGATCCTGCAGCTCCAGGCTCC17640.15535786472768778No Hit
ACACTAGTGTGTCTGATCAGTGACTTCTACCCGGGAGCTGTGACAGTGGC17410.15333222363429957No Hit
CACTAGTGTGGCCTTGTTGGCTTGGAGCTCCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGG17340.15271572417109447No Hit
GTGTCAATGGTCCTCTTTATGTGTTCGGAAGTGGGACCAAGATCACCGTCCGGAGTCAGCCCAAGGCCAACCCCA16170.14241137600038048No Hit
GCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC15780.13897659327680914No Hit
CTCCTGCACCGGGAACAGTTCGACCATCGGGACACTCTATGATGTATATTGGTACCAACAACTTCCAGGGACAGC15490.13642252407210226No Hit
GTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCGGGCGTCAGGCTCAGGTAG14990.13201895647778003No Hit
GATTATTACTGCCGGTCCTATCAGAACAGTGTCAATGGTCCTCTTTATGT14940.13157859971834782No Hit
GGTCATCACTGGTCTCCAGTCTGAAGATGAGGCTGATTATTACTGCCGGTCCTATCAGAACAGTGTCAATGGTC14060.12382832075234071No Hit
GAGAAGGGCTGGATGACTTGGGATGGGGAGAGAGACCCCTCCCCTGGGAT13010.11458082880426407No Hit
GTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCT13000.11449275745237762No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTT12900.11361204393351317No Hit
GGGTAGCAGTAACTATCTGATTATCCAGCTCCACTTCTGTAGGATCACAT12820.11290747311842161No Hit
GGACAATCTCCAGCATGGCCTGGTCTCCTCTCCTCCTCACTCTCCTCGCT12730.11211483095144362No Hit
GTCCTGGGCCCAGTTTGTACTGACGCAGCCGCCCTCAGTGTCTGGGACCCCAGGGCAGACGGTCACCATCTCCTG12640.11132218878446562No Hit
GCCTTGGGCTGACTCCGGACGGTGATCTTGGTCCCACTTCCGAACACATA12380.10903233363541806No Hit
CCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCGGGCGTCAGGCTCAGGTAGCTG11580.10198662548450252No Hit
GAGTGACAGTGGGGTTGGCCTTGGGCTGACTCCGGACGGTGATCTTGGTCCCACTTCCGAACACATAAAGAGGAC11510.10137012602129741No Hit
CTGTCACTCTGTTCCCGCCCTCCTCTGAGGAGCTCCAAGCCAACAAGGCC11480.10110591196563809No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCGGGCGTCAGGCTCAGGTAGCTGCTGG11430.10066555520620586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)