FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004692948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004692948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences662743
Sequences flagged as poor quality0
Sequence length20-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38200.576392357218409No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG11820.1783496770241255No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG11510.17367214742366197No Hit
GTGCAGGGCCACCCCCTTGGGCCGGGAGATGGTCTGCTTCAGTGGCGAGGGCAGGTCTGTGTGGGTCACGGTGCA10820.16326087186133992No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC10110.15254782019576216No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT9210.13896789554925515No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC9110.13745901503297658No Hit
GGTGTAGGTCTCCCCCGTGTTCCATTCCTCTTCGGACACGGTCAGGATGCTGTGGGCGAAGTACCGGCCTGGGGC8570.12931106024507238No Hit
GTCTATTACTGCATGCAAGTTACACAATTTCCTCGGACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAA8510.12840573193530525No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC7890.11905067273437818No Hit
GTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAA7710.11633468780507678No Hit
GTATGTGACCAGCGCCCCAATGCCTGAGCCCCAGGCCCCAGGCCGGTACTTCGCCCACAGCATCCTGACCGTGTC7560.11407136703065893No Hit
CTATTACTGCATGCAAGTTACACAATTTCCTCGGACTTTTGGCCAGGGGA7410.11180804625624112No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC7260.10954472548182327No Hit
CTGTAGCACTGTCTTCATCACAGATATTGCTCTGGGTAGCAGTAACTATC7030.10607430029438258No Hit
CTCCTGTACAGCTTCTGGATTCAACTTTGGTGATTATACTATGAGCTGGTTCCGCCAGGCTCCAGGGAAGGGA6880.10381097951996476No Hit
GCCCTGCACAGGCCCGATGTCTACTTGCTGCCACCAGCCCGGGAGCAGCT6700.10109499459066336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)