FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004693259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004693259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63708716
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTGTGTAATCTCGTAT13274482.0836207089780308TruSeq Adapter, Index 12 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTGTGTAATCGCGTAT1308600.20540360599953073TruSeq Adapter, Index 12 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)