FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004693285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004693285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54423907
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCGTCATCTCGTAT9241511.6980607437830582TruSeq Adapter, Index 14 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCGTCATCGCGTAT1352490.24851027325178987TruSeq Adapter, Index 14 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)