FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004717357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004717357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11223318
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC141190.12580058766935054No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG124960.11133962345181701No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA122250.10892500773835331No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT118650.10571740014851223No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA116010.10336515458262878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)