FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004718003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004718003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382187
Sequences flagged as poor quality0
Sequence length20-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5480.14338530614594427No Hit
GTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGACCCCTCCCCTGGGATCCTGCAGCTCTAGTCTCC4110.10753897960945819No Hit
GCTCAGTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACACATTGAC4070.10649237153540021No Hit
GATTTATACTCCAAGCAACAAAGACTCCTGGACCCCTGTCCGGTTCTCAGGCTCCCTCCTTGGGGGCAAAGCTGC4050.10596906749837122No Hit
GAGTTTATTCAGGGGTGGGGACAGGCGGGCGGCTCAGTAGCAGGTGCCGTCCACCTCCGCCATGACAACAGACAC3960.10361419933174075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)