EGAF00004719920 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719920
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21727979
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	29375	0.0	8.6265335	94-95
GATCGGA	31200	0.0	8.335072	94-95
TCGGAAG	29305	0.0	8.136578	94-95
AGATCGG	35085	0.0	8.068719	94-95
TAGATCG	11790	0.0	7.976845	94-95
ACACGTC	10560	0.0	7.6915164	94-95
CGGAAGA	29670	0.0	7.3641067	94-95
CGTCTGA	8285	0.0	7.309665	94-95
CACGTCT	11820	0.0	6.8515162	94-95
CACACGT	13685	0.0	6.785498	94-95
ACGTCTG	10395	0.0	6.7854977	94-95
GCACACG	15780	0.0	6.561895	94-95
AAGATCG	12830	0.0	6.4602385	94-95
CAGATCG	12910	0.0	6.070682	94-95
AGAGCAC	27855	0.0	5.882958	94-95
GAGATCG	13645	0.0	5.4303875	94-95
AGCACAC	24245	0.0	5.0251026	94-95