EGAF00004719921 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719921
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21727979
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	8290	0.0	9.914434	94-95
AGCGTCG	11780	0.0	9.215465	94-95
GCGTCGT	10290	0.0	9.187854	94-95
CGTCGTG	9525	0.0	8.903271	94-95
GTCGTGT	9060	0.0	8.809625	94-95
AGAGCGT	16880	0.0	8.65464	94-95
ATCGGAA	28995	0.0	8.585874	94-95
CGTGTAG	8210	0.0	8.448626	94-95
GAGCGTC	15225	0.0	8.331635	94-95
AAGAGCG	19985	0.0	8.213348	94-95
GATCGGA	31120	0.0	8.205692	94-95
AGATCGG	35195	0.0	7.9642963	94-95
TCGGAAG	29415	0.0	7.922212	94-95
TAGATCG	11555	0.0	7.8119597	94-95
CGGAAGA	29565	0.0	7.47225	94-95
AAGATCG	11850	0.0	6.2944484	94-95
GAGATCG	14725	0.0	5.872086	94-95
CAGATCG	13320	0.0	5.6532917	94-95
GTGTAGG	11965	0.0	5.519229	94-95