EGAF00004719922 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719922
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22939874
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	30085	0.0	8.672575	94-95
TAGATCG	11905	0.0	8.475395	94-95
GATCGGA	32010	0.0	8.440283	94-95
AGATCGG	36305	0.0	8.3115015	94-95
TCGGAAG	30545	0.0	8.301021	94-95
CGGAAGA	30790	0.0	7.556432	94-95
ACACGTC	10925	0.0	7.1494865	94-95
CGTCTGA	8460	0.0	7.1279354	94-95
CAGATCG	13105	0.0	6.793516	94-95
GCACACG	16425	0.0	6.374316	94-95
CACACGT	14330	0.0	6.2293406	94-95
ACGTCTG	10495	0.0	6.220863	94-95
AAGATCG	13385	0.0	6.137028	94-95
CACGTCT	12210	0.0	6.1054034	94-95
GAGATCG	14955	0.0	5.984878	94-95
AGAGCAC	29225	0.0	5.2559366	94-95
AGCACAC	25870	0.0	5.0932727	94-95