EGAF00004719923 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719923
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22939874
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	10660	0.0	10.25481	94-95
GCGTCGT	9060	0.0	9.879772	94-95
CGTCGTG	8755	0.0	9.107547	94-95
TAGATCG	9830	0.0	8.948875	94-95
ATCGGAA	26180	0.0	8.92097	94-95
GATCGGA	27820	0.0	8.709429	94-95
AGATCGG	31510	0.0	8.58743	94-95
GAGCGTC	14130	0.0	8.482809	94-95
GTCGTGT	8290	0.0	8.408347	94-95
TCGTGTA	7165	0.0	8.400314	94-95
TCGGAAG	26535	0.0	8.346031	94-95
AGAGCGT	15455	0.0	8.188267	94-95
AAGAGCG	18480	0.0	8.114512	94-95
CGGAAGA	27655	0.0	7.7103977	94-95
CGTGTAG	8025	0.0	7.0513706	94-95
AAGATCG	12445	0.0	6.6551347	94-95
CAGATCG	12440	0.0	6.3063107	94-95
GAGATCG	14035	0.0	5.5713067	94-95
CGCGTTA	755	0.0014084221	5.1404314	88-89