EGAF00004719937 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719937
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22254830
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	8750	0.0	9.720129	94-95
CGTCGTG	10580	0.0	9.565792	94-95
GCGTCGT	11440	0.0	9.469692	94-95
AGCGTCG	12885	0.0	9.403355	94-95
GTCGTGT	9970	0.0	8.792821	94-95
AGAGCGT	18520	0.0	8.646014	94-95
CGTGTAG	9015	0.0	8.591104	94-95
GATCGGA	34330	0.0	8.581139	94-95
ATCGGAA	32060	0.0	8.581083	94-95
GAGCGTC	16400	0.0	8.532346	94-95
TCGGAAG	31470	0.0	8.334304	94-95
AGATCGG	38590	0.0	8.24949	94-95
AAGAGCG	21480	0.0	8.062881	94-95
CGGAAGA	32160	0.0	7.933874	94-95
TAGATCG	12445	0.0	7.8841014	94-95
CAGATCG	14460	0.0	6.3254213	94-95
AAGATCG	13630	0.0	6.0656924	94-95
GTGTAGG	13010	0.0	5.423457	94-95
GAGATCG	15985	0.0	5.3801327	94-95