EGAF00004719954 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719954
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21879022
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	36620	0.0	8.514434	94-95
AGATCGG	44255	0.0	8.395664	94-95
GATCGGA	39100	0.0	8.362495	94-95
ACACGTC	13310	0.0	8.319307	94-95
TCGGAAG	35610	0.0	8.236565	94-95
CACACGT	16660	0.0	8.083915	94-95
TAGATCG	14570	0.0	7.909064	94-95
ACGTCTG	12505	0.0	7.849916	94-95
CGTCTGA	9860	0.0	7.719275	94-95
CGGAAGA	35390	0.0	7.46368	94-95
CACGTCT	14145	0.0	7.325324	94-95
AAGATCG	14615	0.0	6.9761853	94-95
GCACACG	18900	0.0	6.736912	94-95
CAGATCG	15525	0.0	6.567275	94-95
GAGATCG	16590	0.0	6.1742716	94-95
AGAGCAC	32355	0.0	5.943302	94-95
GAGCACA	32570	0.0	5.2852707	94-95
AGCACAC	28410	0.0	5.191197	94-95
GAAGAGC	46960	0.0	5.034026	94-95