FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004719955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004719955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21879022
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG124450.010.07535594-95
GTCGTGT113300.09.07568294-95
TCGTGTA98100.09.02944794-95
CGTGTAG97150.08.84885494-95
GCGTCGT130800.08.80552594-95
AGCGTCG149400.08.56760594-95
ATCGGAA355550.08.46915194-95
GAGCGTC185750.08.41236994-95
AGATCGG430550.08.3286594-95
GATCGGA381250.08.2159294-95
AGAGCGT203850.08.08481494-95
AAGAGCG242700.07.88654194-95
TAGATCG136350.07.854936694-95
TCGGAAG344000.07.738708594-95
CGGAAGA350700.07.29968894-95
AAGATCG147900.06.631368694-95
CAGATCG154300.06.46404994-95
GAGATCG163950.06.12703394-95
GTGTAGG132850.05.7201894-95
GAAGAGC463100.05.004910594-95
Produced by FastQC (version 0.11.5)