EGAF00004719964 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719964
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21343635
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	29650	0.0	9.500447	94-95
GATCGGA	32185	0.0	9.467977	94-95
AGATCGG	36625	0.0	9.091896	94-95
TCGGAAG	29210	0.0	9.025587	94-95
TAGATCG	11955	0.0	8.781259	94-95
CGGAAGA	29315	0.0	8.547648	94-95
ACACGTC	10325	0.0	8.166244	94-95
AAGATCG	13235	0.0	7.2321124	94-95
CGTCTGA	7460	0.0	7.0680275	94-95
CACACGT	13275	0.0	7.0671873	94-95
CACGTCT	10715	0.0	6.7828674	94-95
GAGATCG	14600	0.0	6.7349067	94-95
GCACACG	15325	0.0	6.664262	94-95
ACGTCTG	9425	0.0	6.627633	94-95
CAGATCG	13135	0.0	6.292645	94-95
AGAGCAC	27205	0.0	5.508898	94-95
GAAGAGC	40750	0.0	5.0824475	94-95
AGCACAC	23590	0.0	5.074423	94-95