EGAF00004719972 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719972
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21249946
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	30550	0.0	8.520501	94-95
ATCGGAA	28620	0.0	8.480999	94-95
AGATCGG	34520	0.0	8.132281	94-95
TCGGAAG	28460	0.0	7.9445224	94-95
TAGATCG	11265	0.0	7.758582	94-95
CGGAAGA	29200	0.0	7.401577	94-95
CGTCTGA	8265	0.0	7.0977354	94-95
ACACGTC	10745	0.0	7.0509887	94-95
ACGTCTG	10420	0.0	6.587125	94-95
CACGTCT	11740	0.0	6.392706	94-95
GCACACG	16020	0.0	6.271098	94-95
AAGATCG	12640	0.0	6.087846	94-95
CACACGT	14000	0.0	5.9205647	94-95
CAGATCG	12835	0.0	5.8843293	94-95
AGAGCAC	27790	0.0	5.666185	94-95
GAGATCG	14110	0.0	5.638759	94-95
GAGCACA	28040	0.0	5.0397005	94-95