EGAF00004719973 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719973
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21249946
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	8095	0.0	9.2148075	94-95
AGCGTCG	11565	0.0	9.140877	94-95
GCGTCGT	10400	0.0	9.091242	94-95
GATCGGA	30575	0.0	8.538956	94-95
ATCGGAA	28640	0.0	8.47718	94-95
CGTCGTG	9875	0.0	8.299569	94-95
AGAGCGT	16960	0.0	8.278186	94-95
GAGCGTC	15115	0.0	8.204193	94-95
AGATCGG	34535	0.0	8.137646	94-95
GTCGTGT	9175	0.0	7.97477	94-95
CGTGTAG	8465	0.0	7.8578653	94-95
AAGAGCG	20275	0.0	7.7917376	94-95
TCGGAAG	28785	0.0	7.73298	94-95
TAGATCG	10720	0.0	7.578876	94-95
CGGAAGA	29060	0.0	7.4390817	94-95
AAGATCG	12630	0.0	6.319889	94-95
CAGATCG	13285	0.0	5.650658	94-95
GAGATCG	14635	0.0	5.5027585	94-95