FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004719974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004719974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18401918
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA346700.08.76581694-95
TCGGAAG335950.08.67173894-95
GATCGGA373150.08.62168394-95
AGATCGG418200.08.40260494-95
CGGAAGA327400.08.29628394-95
ACACGTC117100.08.29282894-95
CGTCTGA89300.08.2688594-95
ACGTCTG108150.08.25462994-95
CACGTCT125150.07.89221194-95
TAGATCG134050.07.881872794-95
CACACGT146400.07.087230794-95
GCACACG168000.07.05224694-95
AGAGCAC288450.06.617923794-95
CAGATCG144750.06.5939294-95
AAGATCG136000.06.58170994-95
GAGATCG157600.06.146673794-95
GAGCACA288550.05.924444794-95
AGCACAC245600.05.81008394-95
AAGAGCA379700.05.452706394-95
GAAGAGC416800.05.37750194-95
Produced by FastQC (version 0.11.5)