FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004719979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004719979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21737583
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG130800.09.53944994-95
AGCGTCG156750.09.33995894-95
GTCGTGT117700.09.28866194-95
GCGTCGT138300.09.22834594-95
TCGTGTA101200.09.11219494-95
CGTGTAG104450.08.44184194-95
AGAGCGT215850.08.39024594-95
GAGCGTC196650.08.3875994-95
GATCGGA408750.08.3845494-95
ATCGGAA378650.08.35433494-95
AAGAGCG252950.08.26836794-95
TCGGAAG380450.08.18986794-95
AGATCGG461600.08.09906194-95
TAGATCG136700.07.928081594-95
CGGAAGA379250.07.664302394-95
CAGATCG169250.06.55782794-95
AAGATCG153150.06.440251494-95
GTGTAGG139250.05.88837794-95
GAGATCG188850.05.638099794-95
GAAGAGC487150.05.322722494-95
Produced by FastQC (version 0.11.5)