EGAF00004719984 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719984
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24653473
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	15420	0.0	7.6842647	94-95
GATCGGA	41870	0.0	7.6052237	94-95
ATCGGAA	39365	0.0	7.55835	94-95
CGTCTGA	11270	0.0	7.5430202	94-95
AGATCGG	46695	0.0	7.4550357	94-95
CACACGT	19365	0.0	7.4063735	94-95
TCGGAAG	39255	0.0	7.2407804	94-95
CGGAAGA	39330	0.0	7.160558	94-95
ACGTCTG	14080	0.0	7.1338487	94-95
GCACACG	21845	0.0	7.098185	94-95
CACGTCT	16295	0.0	6.9656186	94-95
TAGATCG	15155	0.0	6.768835	94-95
ACCGCGC	5020	0.0	6.63003	1
AAGATCG	15955	0.0	6.295492	94-95
AGAGCAC	36245	0.0	5.5818434	94-95
GAGATCG	18240	0.0	5.558904	94-95
AGCACAC	31485	0.0	5.528234	94-95
CAGATCG	15860	0.0	5.509736	94-95
GAGCACA	37230	0.0	5.1535263	94-95