FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004719997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004719997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22391259
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA284500.09.0508894-95
ATCGGAA264550.09.02358794-95
AGATCGG325350.08.95023994-95
CGTCGTG90650.08.88209894-95
AGCGTCG109450.08.76661894-95
TCGTGTA78500.08.74944894-95
AGAGCGT158450.08.7343294-95
CGTGTAG80700.08.60655394-95
AAGAGCG187400.08.45571194-95
TCGGAAG269350.08.44256394-95
GCGTCGT95300.08.42171994-95
TAGATCG95900.08.36902894-95
GAGCGTC143500.08.35358794-95
GTCGTGT86650.08.34212794-95
CGGAAGA278050.07.715821794-95
AAGATCG120950.07.656594894-95
CGCGTAA5956.011877E-56.4850594-95
CAGATCG134250.06.399870494-95
GAGATCG144250.05.706544494-95
CGCGTTA7652.881146E-45.411844788-89
Produced by FastQC (version 0.11.5)