EGAF00004719999 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004719999
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22661293
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	8870	0.0	9.828446	94-95
AGCGTCG	10185	0.0	9.5390415	94-95
CGTCGTG	8485	0.0	9.210569	94-95
GTCGTGT	8045	0.0	8.8875675	94-95
TCGTGTA	7010	0.0	8.776557	94-95
GATCGGA	26325	0.0	8.58133	94-95
AGATCGG	30260	0.0	8.391725	94-95
TAGATCG	9735	0.0	8.247517	94-95
AGAGCGT	14805	0.0	8.198888	94-95
ATCGGAA	24630	0.0	8.159216	94-95
AAGAGCG	17825	0.0	7.982515	94-95
CGTGTAG	7065	0.0	7.800425	94-95
TCGGAAG	25175	0.0	7.624025	94-95
GAGCGTC	13385	0.0	7.5957003	94-95
CGGAAGA	26145	0.0	7.114028	94-95
CAGATCG	12115	0.0	6.0390654	94-95
AAGATCG	11620	0.0	6.0305696	94-95
GAGATCG	13970	0.0	5.6112547	94-95