EGAF00004720014 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720014
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20615928
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	30565	0.0	8.4675255	94-95
GATCGGA	32790	0.0	8.421564	94-95
TCGGAAG	30330	0.0	8.266961	94-95
AGATCGG	36710	0.0	8.117341	94-95
TAGATCG	11920	0.0	7.7885194	94-95
ACACGTC	11960	0.0	7.5043836	94-95
CGGAAGA	30945	0.0	7.4811535	94-95
CGTCTGA	9000	0.0	7.466178	94-95
ACGTCTG	10760	0.0	7.2158904	94-95
CACGTCT	12595	0.0	6.824405	94-95
AAGATCG	13055	0.0	6.2929406	94-95
CACACGT	14960	0.0	6.0629807	94-95
GCACACG	17150	0.0	5.925624	94-95
CAGATCG	12425	0.0	5.5991955	94-95
GAGATCG	14940	0.0	5.5625234	94-95
AGAGCAC	28265	0.0	5.376323	94-95
AGCACAC	25110	0.0	5.248083	94-95
GAAGAGC	40705	0.0	5.039882	94-95