EGAF00004720015 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720015
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20615928
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	12890	0.0	8.940311	94-95
TCGTGTA	9135	0.0	8.71365	94-95
ATCGGAA	30150	0.0	8.306482	94-95
CGTGTAG	9045	0.0	8.301229	94-95
GATCGGA	32385	0.0	8.298174	94-95
GTCGTGT	10095	0.0	8.285146	94-95
TCGGAAG	30085	0.0	8.182266	94-95
AGATCGG	36470	0.0	8.0527935	94-95
GCGTCGT	11315	0.0	8.021815	94-95
GAGCGTC	16220	0.0	7.9398494	94-95
CGTCGTG	10810	0.0	7.9349713	94-95
AAGAGCG	20830	0.0	7.745409	94-95
TAGATCG	11340	0.0	7.4803004	94-95
CGGAAGA	30325	0.0	7.3731427	94-95
AGAGCGT	18025	0.0	7.3688617	94-95
CAGATCG	13230	0.0	6.214127	94-95
AAGATCG	12290	0.0	6.167407	94-95
GTGTAGG	13045	0.0	5.2822356	94-95
GAGATCG	15270	0.0	5.2283435	94-95