EGAF00004720018 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720018
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27295216
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	36565	0.0	9.157299	94-95
TCGGAAG	36345	0.0	9.036316	94-95
GATCGGA	39360	0.0	8.965564	94-95
AGATCGG	44745	0.0	8.83126	94-95
TAGATCG	14320	0.0	8.722814	94-95
CGGAAGA	37005	0.0	8.047316	94-95
ACCGCGC	5850	0.0	7.7140775	1
CACACGT	16180	0.0	7.27976	94-95
GCACACG	18815	0.0	7.1185045	94-95
ACACGTC	12435	0.0	7.0468407	94-95
AAGATCG	15985	0.0	6.7000456	94-95
ACGTCTG	11900	0.0	6.5454683	94-95
CAGATCG	17210	0.0	6.512909	94-95
CGTCTGA	9715	0.0	6.086539	94-95
CACGTCT	14000	0.0	6.072519	94-95
GAGATCG	18245	0.0	5.8701143	94-95
AGAGCAC	34715	0.0	5.7187743	94-95
GAGCACA	35465	0.0	5.189381	94-95
AGCACAC	29680	0.0	5.080702	94-95