FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19947224
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA387600.09.07891194-95
ACACGTC125400.09.07668694-95
GATCGGA419850.09.00845194-95
TCGGAAG372100.08.74972694-95
TAGATCG149550.08.60987994-95
GCACACG181350.08.45999994-95
AGATCGG471100.08.44118894-95
CGGAAGA366850.08.37075994-95
CACACGT156250.08.34692194-95
CACGTCT127150.07.963337494-95
CGTCTGA90900.07.956454894-95
ACGTCTG110200.07.552819794-95
CAGATCG158950.06.593945594-95
AAGATCG152500.06.59294894-95
AGAGCAC316900.06.42768594-95
AGCACAC264500.06.40112394-95
GAGATCG171500.06.263508394-95
AAGAGCA416950.05.727025594-95
GAAGAGC457300.05.652087794-95
GAGCACA307400.05.638935694-95
Produced by FastQC (version 0.11.5)