FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22989799
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA354150.09.14019894-95
GATCGGA380100.08.89731794-95
TCGGAAG347900.08.67637194-95
ACACGTC120800.08.47339294-95
AGATCGG427550.08.25982994-95
CGGAAGA347850.08.16556394-95
CACACGT153400.08.00409394-95
TAGATCG137650.07.970998394-95
CGTCTGA94550.07.43493494-95
GCACACG176950.07.207267894-95
ACGTCTG115650.07.064147594-95
CACGTCT128400.06.991554394-95
AAGATCG147450.06.700319394-95
GAGATCG169400.05.944282594-95
AGAGCAC310600.05.719355694-95
CAGATCG151750.05.602677392-93
AAGAGCA423800.05.295632494-95
AGCACAC275100.05.222900494-95
GAAGAGC458300.05.1405494-95
GAGCACA318700.05.074719494-95
Produced by FastQC (version 0.11.5)