FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22989799
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG115400.010.25118294-95
GCGTCGT119950.010.0207694-95
TCGTGTA90200.09.40182394-95
AGCGTCG138650.09.3202994-95
ATCGGAA349600.09.13905494-95
GTCGTGT105050.09.11295994-95
GATCGGA376250.08.83897594-95
CGTGTAG91000.08.82319294-95
AAGAGCG231600.08.63622594-95
TCGGAAG341650.08.48954994-95
AGAGCGT191950.08.36582994-95
TAGATCG129300.08.35917294-95
AGATCGG424950.08.24526494-95
GAGCGTC177300.08.22640394-95
CGGAAGA345500.08.09242794-95
CAGATCG157750.06.26432694-95
AAGATCG143300.06.100311894-95
GTGTAGG131900.05.60100594-95
GAGATCG174550.05.416435794-95
GAAGAGC458000.05.04658794-95
Produced by FastQC (version 0.11.5)