FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19034964
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG324550.08.950314594-95
TAGATCG113450.08.71596394-95
GATCGGA284250.08.59252194-95
ATCGGAA268800.08.58355994-95
TCGGAAG264300.08.37082694-95
CGGAAGA265500.07.761382694-95
AAGATCG100450.07.38887394-95
CGTCTGA73050.07.271292794-95
ACACGTC96050.07.159528794-95
CAGATCG119700.06.933583394-95
GCACACG140000.06.927541394-95
ACGTCTG89200.06.88523594-95
CACACGT120650.06.702194-95
ACCGCGC39750.06.68590641
CACGTCT102900.06.52161194-95
GAGATCG136900.06.356915594-95
AGAGCAC245900.05.660612694-95
AGCACAC217300.05.456248394-95
GAAGAGC357850.05.23491894-95
GAGCACA249500.05.018191394-95
Produced by FastQC (version 0.11.5)