EGAF00004720060 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720060
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21701810
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	35825	0.0	8.60869	94-95
ATCGGAA	33355	0.0	8.584213	94-95
AGATCGG	40105	0.0	7.9800477	94-95
TCGGAAG	32705	0.0	7.9708076	94-95
TAGATCG	13570	0.0	7.768144	94-95
CGTCTGA	9580	0.0	7.6578546	94-95
CGGAAGA	33245	0.0	7.241453	94-95
ACACGTC	12470	0.0	7.1777616	94-95
CACACGT	15300	0.0	7.1070304	94-95
ACGTCTG	11895	0.0	6.886028	94-95
GCACACG	17685	0.0	6.698994	94-95
AAGATCG	14265	0.0	6.4576435	94-95
CACGTCT	13180	0.0	6.160626	94-95
CAGATCG	13830	0.0	5.9397483	94-95
AGAGCAC	30540	0.0	5.9082475	94-95
GAGCACA	31510	0.0	5.590744	94-95
GAGATCG	15550	0.0	5.5423045	94-95
AGCACAC	26405	0.0	5.466779	94-95
GAAGAGC	43510	0.0	5.031019	94-95