FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19981739
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA324850.09.16572294-95
GATCGGA352650.09.07556994-95
AGATCGG401200.08.91756494-95
TCGGAAG315100.08.6738194-95
TAGATCG130500.08.05376794-95
CGGAAGA313400.08.00926194-95
ACGTCTG99950.07.975580794-95
ACACGTC109050.07.788667794-95
AAGATCG141000.07.756890394-95
CGTCTGA81700.07.695372694-95
GCACACG160300.07.56298494-95
CACACGT135650.07.468164494-95
CAGATCG134650.07.4002994-95
CACGTCT115250.07.22556994-95
AGAGCAC279450.06.316473594-95
GAGATCG150950.05.768179494-95
GAAGAGC413950.05.547959394-95
AGCACAC239800.05.392040794-95
AAGAGCA380500.05.27498894-95
GAGCACA280700.05.20647994-95
Produced by FastQC (version 0.11.5)