FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21227932
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA407250.08.45146294-95
AGATCGG459350.08.32025994-95
ATCGGAA379450.08.30067694-95
TCGGAAG372100.08.23482994-95
ACACGTC133250.08.09306894-95
CGGAAGA369550.08.08596794-95
TAGATCG147700.07.944580694-95
CACACGT163550.07.5667994-95
GCACACG187800.07.4750994-95
CGTCTGA103500.07.43582594-95
ACGTCTG121850.06.900844694-95
CACGTCT144750.06.662420394-95
CAGATCG156500.06.617541394-95
AAGATCG159150.06.50735394-95
GAGATCG165500.06.15720894-95
AGAGCAC331050.05.94102494-95
AGCACAC283400.05.800037494-95
GAGCACA328350.05.60646694-95
AAGAGCA434650.05.35016994-95
GAAGAGC469650.05.290319494-95
Produced by FastQC (version 0.11.5)