FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20680741
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG132300.010.12434394-95
CGTCGTG108150.010.12329794-95
GTCGTGT98500.09.93364394-95
GCGTCGT115400.09.79599994-95
TCGTGTA84950.09.56115494-95
ATCGGAA346550.09.34065994-95
AGAGCGT189150.09.14055694-95
GAGCGTC169550.09.11865594-95
GATCGGA381100.09.09209394-95
TCGGAAG333150.08.67557794-95
AAGAGCG224650.08.65814994-95
AGATCGG428300.08.49490194-95
CGGAAGA339750.08.37423194-95
CGTGTAG87150.08.36601494-95
TAGATCG137950.07.936459594-95
AAGATCG148950.06.88796494-95
CAGATCG148350.06.483582594-95
GAGATCG167700.05.947901794-95
GTGTAGG124100.05.39665894-95
GAAGAGC430600.05.25061994-95
Produced by FastQC (version 0.11.5)