FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21391697
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG152750.010.06044794-95
GCGTCGT130650.09.88971394-95
CGTCGTG120400.09.33101594-95
TCGTGTA98900.09.27011794-95
GTCGTGT113250.08.8295494-95
GAGCGTC189250.08.68489294-95
ATCGGAA367850.08.65223494-95
GATCGGA391350.08.58786894-95
AAGAGCG245800.08.52277394-95
AGAGCGT210300.08.50452294-95
CGTGTAG97850.08.1316494-95
TCGGAAG357550.08.06447594-95
AGATCGG440800.07.980088794-95
TAGATCG139050.07.840358394-95
CGGAAGA357600.07.465570494-95
AAGATCG150000.06.761309694-95
CAGATCG152700.06.346223494-95
GAGATCG165700.06.292688494-95
GAAGAGC450800.05.447921894-95
GTGTAGG134100.05.242725494-95
Produced by FastQC (version 0.11.5)