FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19446689
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA98500.08.48499194-95
ATCGGAA359150.08.11834594-95
ACGTCTG118500.08.014688594-95
TCGGAAG350550.07.958530494-95
AGATCGG426350.07.91357694-95
GATCGGA381150.07.9051694-95
ACACGTC131500.07.69181594-95
TAGATCG140800.07.58848194-95
CGGAAGA341950.07.51987994-95
CACGTCT137450.07.324299394-95
GCACACG184350.07.07089294-95
AAGATCG144550.06.915267594-95
CACACGT164550.06.85394694-95
CAGATCG136950.06.570859494-95
AGAGCAC300550.06.154116694-95
GAGATCG157950.05.667176294-95
AGCACAC266650.05.48509494-95
GAAGAGC430950.05.28919294-95
AAGAGCA407450.05.28540194-95
GAGCACA303100.05.2406594-95
Produced by FastQC (version 0.11.5)