FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21962361
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG480050.09.05393194-95
TCGGAAG377000.09.03043694-95
GATCGGA424700.08.91556494-95
TAGATCG159700.08.83914494-95
ATCGGAA392050.08.81690794-95
ACACGTC126150.08.44417694-95
CGGAAGA370950.08.20558494-95
CACACGT157950.07.750473594-95
CGTCTGA95000.07.641805694-95
GCACACG183950.07.609494-95
CAGATCG158900.07.539901394-95
ACGTCTG114900.07.309394494-95
CACGTCT133450.07.288924794-95
AAGATCG166650.07.061135394-95
AGAGCAC326300.06.594598394-95
GAGATCG181900.06.45610694-95
GAAGAGC472400.05.830697594-95
GAGCACA327500.05.788068394-95
AGCACAC282050.05.5936394-95
AAGAGCA444800.05.552443594-95
Produced by FastQC (version 0.11.5)