EGAF00004720154 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720154
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20763694
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	31790	0.0	9.073666	94-95
GATCGGA	34150	0.0	8.995816	94-95
AGATCGG	38790	0.0	8.617472	94-95
ACACGTC	11520	0.0	8.263973	94-95
TCGGAAG	31435	0.0	8.239641	94-95
TAGATCG	11815	0.0	8.117918	94-95
CGGAAGA	31620	0.0	7.5081882	94-95
CGTCTGA	8535	0.0	7.120877	94-95
CACACGT	14620	0.0	7.112524	94-95
CACGTCT	12535	0.0	6.9508634	94-95
GCACACG	17040	0.0	6.6736426	94-95
ACGTCTG	10880	0.0	6.415277	94-95
CAGATCG	13780	0.0	6.3400927	94-95
AAGATCG	13420	0.0	6.244817	92-93
GAGATCG	16180	0.0	6.1479807	94-95
AGAGCAC	28630	0.0	5.547557	94-95
AGCACAC	25470	0.0	5.4901395	94-95
GAGCACA	29900	0.0	5.216644	94-95