EGAF00004720156 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720156
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24861349
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	39160	0.0	9.139377	94-95
GATCGGA	41830	0.0	8.873952	94-95
TCGGAAG	38200	0.0	8.691401	94-95
AGATCGG	47080	0.0	8.535125	94-95
ACACGTC	12970	0.0	8.386321	94-95
TAGATCG	15955	0.0	8.156986	94-95
CGGAAGA	37605	0.0	8.108964	94-95
CACACGT	16380	0.0	7.49588	94-95
GCACACG	18965	0.0	7.488491	94-95
ACGTCTG	11845	0.0	7.438491	94-95
CACGTCT	13730	0.0	7.43779	94-95
CGTCTGA	9610	0.0	7.3891377	94-95
AAGATCG	16235	0.0	7.2702622	94-95
CAGATCG	17105	0.0	6.0118866	94-95
AGAGCAC	33850	0.0	5.914457	94-95
GAGATCG	17280	0.0	5.7998223	94-95
AGCACAC	29210	0.0	5.6831827	94-95
GAGCACA	34135	0.0	5.58678	94-95
GAAGAGC	50000	0.0	5.215288	94-95