EGAF00004720182 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720182
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24292286
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	39535	0.0	8.576458	94-95
ATCGGAA	36565	0.0	8.5263	94-95
AGATCGG	44360	0.0	8.301981	94-95
TCGGAAG	36875	0.0	8.184176	94-95
TAGATCG	13880	0.0	7.85208	94-95
ACACGTC	13860	0.0	7.6235676	94-95
CGGAAGA	36545	0.0	7.530381	94-95
CACACGT	17165	0.0	7.2070146	94-95
GCACACG	19755	0.0	7.0193567	94-95
CGTCTGA	10475	0.0	6.9363165	94-95
ACGTCTG	12505	0.0	6.8166695	94-95
CACGTCT	14645	0.0	6.6798906	94-95
CAGATCG	15325	0.0	6.058119	94-95
AAGATCG	15495	0.0	5.9456816	94-95
AGAGCAC	34060	0.0	5.688621	94-95
GAGATCG	18550	0.0	5.2224913	94-95
AGCACAC	29115	0.0	5.170517	94-95