EGAF00004720216 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720216
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21933574
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	32295	0.0	8.73989	94-95
TAGATCG	12020	0.0	8.670007	94-95
AGATCGG	36320	0.0	8.614477	94-95
TCGGAAG	29950	0.0	8.576099	94-95
ATCGGAA	30275	0.0	8.429149	94-95
CGGAAGA	30480	0.0	7.8895793	94-95
ACACGTC	10695	0.0	7.8130617	94-95
CGTCTGA	8350	0.0	7.363303	94-95
ACGTCTG	10080	0.0	6.7825236	94-95
GCACACG	15295	0.0	6.6738787	94-95
AAGATCG	13460	0.0	6.507897	94-95
CACGTCT	11965	0.0	6.4877543	94-95
CACACGT	13550	0.0	6.464671	94-95
CAGATCG	12715	0.0	6.403791	94-95
AGAGCAC	28095	0.0	5.60201	94-95
AGCACAC	24325	0.0	5.377224	94-95
GAGCACA	28865	0.0	5.3456583	94-95
GAGATCG	14615	0.0	5.343877	94-95
GAAGAGC	41535	0.0	5.2524347	94-95