FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20477791
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA374000.08.9391794-95
ATCGGAA346000.08.9008294-95
TCGGAAG335900.08.52517794-95
CGGAAGA333350.08.49066994-95
AGATCGG419750.08.46266394-95
TAGATCG131800.08.0530194-95
ACACGTC115400.07.715988694-95
CACACGT144300.07.585788294-95
GCACACG169100.07.063020794-95
CACGTCT122850.06.6875594-95
AAGATCG144200.06.68539294-95
AGAGCAC291750.06.657459794-95
ACGTCTG106450.06.491027494-95
CGTCTGA88400.06.285353792-93
CAGATCG146050.06.14548894-95
GAGATCG164300.05.80971294-95
GAAGAGC422600.05.60185494-95
AAGAGCA393450.05.58236694-95
GAGCACA298450.05.425988794-95
AGCACAC249750.05.229056494-95
Produced by FastQC (version 0.11.5)