EGAF00004720245 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720245
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20477791
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGAGCGT	19110	0.0	9.662593	94-95
GCGTCGT	11775	0.0	9.626997	94-95
CGTCGTG	10945	0.0	9.488532	94-95
AGCGTCG	13150	0.0	9.162534	94-95
GAGCGTC	16910	0.0	9.022457	94-95
GATCGGA	37235	0.0	8.877877	94-95
ATCGGAA	34305	0.0	8.86026	94-95
AAGAGCG	22815	0.0	8.812178	94-95
TCGTGTA	8980	0.0	8.706687	94-95
GTCGTGT	10175	0.0	8.595017	94-95
TCGGAAG	33740	0.0	8.459239	94-95
AGATCGG	42030	0.0	8.430467	94-95
CGGAAGA	33630	0.0	8.317311	94-95
TAGATCG	12935	0.0	7.808288	94-95
CGTGTAG	8930	0.0	7.478048	94-95
CAGATCG	15315	0.0	6.5638204	94-95
AAGATCG	14060	0.0	6.4398093	94-95
GAGATCG	17170	0.0	5.716275	94-95
GAAGAGC	42705	0.0	5.3979187	94-95